To support research and education, Master in Pest Science UGM under Departmen of Plant Protection managed three laboratories which are:
- Laboratory of Plant Diseases consisted of Room of Mycology, Room of Bacteriology and Room of Virology
- Laboratory of Pest Science consisted of Room of Basic Entomology/Agricultural Entomology, Room of Applied Entomology/Pest Vertebrate, Room of Nematology
- Laboratory of Pest Control consisted of Room of Clinical Plant Disease, Room of Biological control and Room of Toxicology.